rs30237665 SNP Detail

Summary

• ID
  rs30237665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52540152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATCTGAA TCGTCATTCA
  TCAAGGACAA GGACCATCCT TCTTTAGCCT TGGTACAGTT GTTAGCAAGC CAAGCTTTTA
  TTATAGCTGA GTTCTATGCA TGTATGGTCA CTGATTTCAT GTGTCTAGAG AAACAACTGT
  CACACTGGTA GTCCCCAGTC CCCCAGATCT GGATCATTGT TCTAGAACCC CAAAGTCATG
  R
  GCCACTCCCT TCTTTTGACT AGGGTAGAGG GAACAGTCCC ATTAAAGAAC AGTCCAGCAG
  GGGGTACCTG AAGCCATGTC TGGAAATCCA GCCTACAGCC TACTTTCCTG TTTTCTGAGC
  ACTGGTTTTC CTGTTTAAAA TAGTTACAAT GGCCTCTGCT TCCTGCTGCC AAACCCTGAT
  AGAAAATGGT AGCATATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46928768	NES10805423	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30237665					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928768	NES10805423	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52540152 () rs orientation: forward

Symbol	Name	Function Class
Rr367437	regulatory region 367437	1657 bp upstream
Rr576555	regulatory region 576555	50 bp proximal
Rr576556	regulatory region 576556	1631 bp proximal
Tssr33260	transcription start site region 33260	1715 bp downstream
Tssr33261	transcription start site region 33261	1753 bp downstream