rs30237622 SNP Detail

Summary

• ID
  rs30237622
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121394222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTTTTTTC TATCTTCTCT CTTCCACTGA ACACCTCTCA
  ACTGTCCTTA TAAATTTGGT ACTTCTCTGA TTGTAGAACA AATTCTTGTA ATGACTGGAT
  M
  AAAGTTATGC AAATTTGGAA TTCTGACTCA CTGTCTCTTA CATTAAATAT GCTACCAGGA
  CACAACAGCT GATTTCCGGT TCCCCCTTTA GTCTTTCTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45478957	mCV23989749	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		A
ss46928382	NES10695272	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	A	C	C		A	C	C	A		C
ss135724838	ENSMUSSNP881569	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							A
ss320904155	CHEV_3_121303491	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30237622					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928382	NES10695272	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121394222 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	within coordinates
Rr584124	regulatory region 584124	53 bp proximal
Rr584125	regulatory region 584125	1248 bp proximal