rs30236929 SNP Detail

Summary

• ID
  rs30236929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52542950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGGATAC TAGAGATTAA
  ATTCAAGTCA TCAGGCTTGG TGGCAGGCAT CTTTACCTAA CGAGATACTA GAGATTAAAT
  TCAAGTCATC AGGCTTGGTG GCAGGCATCT TTACCTAACG AACCGGCTTG CCAGCCCCAA
  GTTTGTAGAT TTTCTATGTC CTGTCTTTTT AGAGCTTCAC AGTAACCCTG TGTAGTAGGT
  R
  GAAATATTGC TCTAATTTCA AGTTTGTGTA TAAAGAAACT AATTTAGGTT TGAGACATAG
  CTCAGTGTTT GAGCACTTAA GTGACATTCT TAATCCAGCA CCACAGGGAA AAGAAAAAGA
  AAAAGAAAAA GATTTGGTTC AATAACGTCT CTTTGACCTG TGGACACCGC AAATTTCATT
  ATAAATGATT TAGAGAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46928831	NES10805168	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30236929					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928831	NES10805168	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52542950 () rs orientation: forward

Symbol	Name	Function Class
Rr367437	regulatory region 367437	817 bp downstream
Rr576556	regulatory region 576556	468 bp distal
Tssr33260	transcription start site region 33260	1074 bp upstream
Tssr33261	transcription start site region 33261	1038 bp upstream