rs30236927 SNP Detail

Summary

• ID
  rs30236927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52542663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGTCC AGGAAGAAAC
  ACTTACGAGA GAAGATCTAT AGCTGTTTGC CAGAAGTGAT ATTTAAAAAA AAATCATTAA
  AAAAGTGAAT GTCAATAAAT AATGCTAGAA TTTTCAAGTA TATAGTTTTT ATTTTCTTAA
  TTTAAAATTT TAAATTCAAT TATATTCTTG AAGTGTATTA GACTTTATTT TATTTGTACT
  R
  TGTACAGGTG TATAAGTGTG TGCGTGGGGG CGGGCATGGA CATGGCCTAT GTGCACGTGG
  AGGCAACTGA TTTTCTCCTT TCACGCTTGT GGATACTAGA GATTAAATTC AAGTCATCAG
  GCTTGGTGGC AGGCATCTTT ACCTAACGAG ATACTAGAGA TTAAATTCAA GTCATCAGGC
  TTGGTGGCAG GCATCTTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss46928828	NES10805234	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30236927					SNP	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928828	NES10805234	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52542663 () rs orientation: forward

Symbol	Name	Function Class
Rr367437	regulatory region 367437	530 bp downstream
Rr576556	regulatory region 576556	181 bp distal
Tssr33260	transcription start site region 33260	787 bp upstream
Tssr33261	transcription start site region 33261	751 bp upstream