rs30234761 SNP Detail

Summary

• ID
  rs30234761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121397708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGATGTAC TGGTGAGTGC ATCATATATG TACTGGCAGG
  TGTGAATGAA TACCGTGTCC ACAACAGCCG CAGTCCTGAC TGAAATCCAC ATTTACCCAT
  Y
  GCTTCCTCTG ATGCTGAACC CAGTTGATGG CCATTTTTTT CAAAAAGAGC CATCCATTCA
  TTTTGTTTTT GCTTCTGAAT CACGGAAGGA GGGTTGTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46928442	NES10695128	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	T	C	C		T	C	C	T		C
ss135724919	ENSMUSSNP5412161	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss320904179	CHEV_3_121306977	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30234761					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928442	NES10695128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121397708 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65912	predicted gene, 65912	1428 bp upstream
Rr584125	regulatory region 584125	1458 bp distal
Rr584126	regulatory region 584126	972 bp proximal