rs30232360 SNP Detail

Summary

• ID
  rs30232360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56300454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACACTA AGCTTCTAAC
  AGCTTTGACG GCTTTTAAGG AAAATCCCCA TCTGTCTGAC TCTTCTCTGA CGAATTACAC
  TTAGTGGACA TTCCCAGCTT CATGAACAGT CTTTCTACAA GAACGTTTCC TGAGCAGAGA
  AGGAGGCAGA GATGAATTAA GAGTGTATTT ATTAACTGTG TCATTTTACA ATGTCCTGCC
  R
  CCATGGTCCA AGATACAGAT TGCGATGTGA CTCAGGTAGG TGAGCAGCAA ACGTGTACTT
  GCTCACCCCT TTTGCTCTCT TCGTAGAGGA CATTTTTACA CTCAGAGATA CATTCTTGGC
  TGAAGCATGT ACACACCAGT CATTAATCAC TTGGCTAGAT AACTGAATTC AATCCCATCT
  CACTGTTCTC AGTTTATATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45924617	mCV23890871	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss47926152	NES11648859	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	G	G		G	G	G	A	G	G	A	G	G
ss133224547	ENSMUSSNP2411792	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30232360					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47926152	NES11648859	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56300454 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631057	regulatory region 631057			325 bp distal