rs30231506 SNP Detail

Summary

• ID
  rs30231506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148573293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATATTTTAT AATCGCTCAC ACATATTCTA TTATTTTCCA
  AGAGGAAGAC TCATTAAAAT AACAATTCAA TGACTGAGTG AGCTTCTCAT GGAACATCGT
  Y
  GCTTTCCCTC GCACTGAGGG CCCCTGGCAT AGACAGAGGA AAAGAGAACA AACACTTGTT
  GTGAGACTGA AAAGCATCAA GAACACAAGG CTTGGGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45408974	mCV23528695	ABI	CRAMUS_MOUSE	f	SNP							C		T
ss47451144	NES10331724	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		C	T	C	T		C	T	T	C		C
ss136064603	ENSMUSSNP195133	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
ss321016703	CHEV_3_148530621	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30231506					SNP	C	T	C	T	C	T	C	C	T	C	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47451144	NES10331724	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148573293 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr375898	regulatory region 375898	1897 bp downstream
Rr587218	regulatory region 587218	29 bp proximal