rs3023120 SNP Detail

Summary

• ID
  rs3023120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAAAGAA ACTGTCTCAA
  AAAAAAACCC CTTAATTAAT TAATAATTAG TAAATTAATT AAATGTTAGT TTTATACTCA
  TGTTTAATAT TTTTTAATAA TTGTAAGGTT GATTTAGCCC TCCCCTCTCC ATATTAGTGT
  GGATTGTGAA CAAAATATAC ACTAATGAGC TCAGTGCTCA GTAATAAGGT AGTTGGTGTT
  Y
  TAGTCATTTT ATTGTATAAA ATCCAAAACT CAGGTCCCTT GAAAGGGTAG CACAGAGACA
  GAAAGAGGGA GGGAGAGATA GACAGACAGA AAGAAGCAAA TGTTTAAAGT ATCAGTCCTA
  AACAAACAAA CAAACAAACA AAAAACAAAA AATGAAACAA AACAAAACCA GGGACAGCCT
  GAGCATTGAT TAAAAAGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	A/He	AKR	B10.D2-H2	BALB/c	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2	MRL/Mp	NZW/Lac
ss4319431	M-03828_3	WIMOUSESNPS	MITROCHE_POP	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	C
ss4327361	M-03828-3	WIMOUSESNPS	MITROCHE_POP	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	A/He	AKR	B10.D2-H2	BALB/c	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2	MRL/Mp	NZW/Lac
rs3023120					SNP	C	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss4319431	M-03828_3	ROCHEBIO	RPAMM	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400707 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	within coordinates
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1813 bp downstream
Saa2	serum amyloid A 2	550 bp upstream
Tssr66700	transcription start site region 66700	549 bp upstream
Tssr66701	transcription start site region 66701	1070 bp upstream