rs30230620 SNP Detail

Summary

• ID
  rs30230620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56299739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGAACC AAAACCTAGA
  AGAATAGAGA TGCTTTAAAG TCAAGAAAGT AAAAGGCACA GATACTTGTT TTACAAGATA
  AAGATGCTTA GTGTAAAATT TCAGTTTTGT TTCTGAAAAG CATACAAGAG CCTTAAGTTC
  TGGAAACTAC ACAGCAATAA ACTGTACTCA AAACAAGGCC TGGAAGAGTT CAGTGTGTGT
  Y
  AGACTAATTT CACAGGAATC TAAATTTCAC TTTGGGGGAA GAAATCCTAG CCTTCCAGAA
  GATGCACGGA TCCTACAGCA GTTGTTGGTT GTTTTCAGTG CAATTGCCAG GAACACAGAA
  TCCATGCCTG CTTTCCCCAC AGAGCCCTTC AGACCTCTGT CTGTCAAAAC AATTGACAGG
  CTGCAGCATG GCTCCTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47926132	NES11648839	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	T	C	C	T	T	C
ss133224532	ENSMUSSNP5150881	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C						C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30230620					SNP	T	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47926132	NES11648839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56299739 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631057	regulatory region 631057			40 bp proximal