rs30230618 SNP Detail

Summary

• ID
  rs30230618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56299720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGACACTT AACTAAATCC
  TGTTGAACCA AAACCTAGAA GAATAGAGAT GCTTTAAAGT CAAGAAAGTA AAAGGCACAG
  ATACTTGTTT TACAAGATAA AGATGCTTAG TGTAAAATTT CAGTTTTGTT TCTGAAAAGC
  ATACAAGAGC CTTAAGTTCT GGAAACTACA CAGCAATAAA CTGTACTCAA AACAAGGCCT
  R
  GAAGAGTTCA GTGTGTGTCA GACTAATTTC ACAGGAATCT AAATTTCACT TTGGGGGAAG
  AAATCCTAGC CTTCCAGAAG ATGCACGGAT CCTACAGCAG TTGTTGGTTG TTTTCAGTGC
  AATTGCCAGG AACACAGAAT CCATGCCTGC TTTCCCCACA GAGCCCTTCA GACCTCTGTC
  TGTCAAAACA ATTGACAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47926130	NES11648838	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	A	G	G	A	A	G
ss133224529	ENSMUSSNP2713645	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30230618					SNP	A	A	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47926130	NES11648838	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56299720 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631057	regulatory region 631057			59 bp proximal