rs30230615 SNP Detail

Summary

• ID
  rs30230615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56299206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTCTTT AACCATGATT
  TCATAGTGTT CATTCATTCC TGCCACATAT AGTTTAGGGT GGCACATGTC AGAGTCAACA
  ACAATACAAG CTGGTCTAGA ACTTATTGTG GAGGCTGGTC TCTAAGTCAC AGCAGTCCTC
  CTGCCTCAGA GCTCCTGACT GCTGGAATTC CAGGCATTAG GCCCACATAT GGCTCCCTAG
  Y
  CCATATTTCC CGGATTCTAT GATAGAAAGG CAAAGTCTGC GTATCTGTTT AGGACTCACA
  ATTGCCATAT ATGCTGCTTA AACTCTAGTG TATCTAGCCA TGAATATACA ATTTCTGAGT
  ATAATTATAC CTGAAATAGC TAAAAATAGA TATATAGTAA TATTCTGCAT CCTTATTCAT
  CATATTTTAT ATGTAGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47926126	NES11648834	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C	C	C	T	T	C	T	C
ss133224520	ENSMUSSNP3931805	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30230615					SNP	T	C	C	C	C	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47926126	NES11648834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56299206 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631057	regulatory region 631057			573 bp proximal