rs3023024 SNP Detail

Summary

• ID
  rs3023024
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524007 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGAGG CTCAGAGGTG CACATGGTGA
  M
  GGACAAGGAT GTGTAGGCAG AAAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45724493	mCV22547135	ABI	CRAMUS_MOUSE	r	SNP	G	G	T
ss147620229	ENSMUSSNP721521	ENSEMBL	ENSEMBL_Sanger	r	SNP			T
ss321367527	CHEV_4_137352611	CHEVERUD	SCREENING_POP	r	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3023024					SNP	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524007 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	312 bp upstream
Cpgi15139	CpG island 15139	within coordinates
Rr602723	regulatory region 602723	1851 bp distal
Rr602724	regulatory region 602724	323 bp distal
Rr602725	regulatory region 602725	367 bp distal
Rr602726	regulatory region 602726	within coordinates
Rr602727	regulatory region 602727	232 bp distal
Tssr1350	transcription start site region 1350	400 bp upstream
Tssr44149	transcription start site region 44149	371 bp upstream
Tssr44150	transcription start site region 44150	335 bp upstream