rs3023023 SNP Detail

Summary

• ID
  rs3023023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524062 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTAC TGACTTAGTT AAGGGCAAAA
  R
  AGAAAGTGGA TAGGAAAGGG GTAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45659158	mCV22547134	ABI	CRAMUS_MOUSE	r	SNP	C	C	C	T
ss147620234	ENSMUSSNP288420	ENSEMBL	ENSEMBL_Sanger	r	SNP				T
ss321367528	CHEV_4_137352666	CHEVERUD	SCREENING_POP	r	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3023023					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524062 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	367 bp upstream
Rr602723	regulatory region 602723	1906 bp distal
Rr602724	regulatory region 602724	378 bp distal
Rr602725	regulatory region 602725	422 bp distal
Rr602726	regulatory region 602726	within coordinates
Rr602727	regulatory region 602727	287 bp distal
Tssr1350	transcription start site region 1350	455 bp upstream
Tssr44149	transcription start site region 44149	426 bp upstream
Tssr44150	transcription start site region 44150	390 bp upstream