rs3023022 SNP Detail

Summary

• ID
  rs3023022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524109 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGAT ATTAGGGAGG GAGGGCCCTG
  Y
  CCAAGGGGTC TCCTTCTGCT TCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	C57BL/10J	C57BR/cdJ	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PERA/EiJ	SEA/GnJ	SM/J	ST/bJ	SWR/J
ss16375711	04.136.579	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	C		T	T		C	C	C	C	T	C	T	T	C	C	T		C	C
ss45607362	mCV22547133	ABI	CRAMUS_MOUSE	r	SNP	A	A			A			G
ss147620239	ENSMUSSNP2602744	ENSEMBL	ENSEMBL_Sanger	r	SNP		A						G
ss321367529	CHEV_4_137352713	CHEVERUD	SCREENING_POP	r	SNP												G								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	C57BL/10J	C57BR/cdJ	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PERA/EiJ	SEA/GnJ	SM/J	ST/bJ	SWR/J
rs3023022					SNP	T	T	C	C	T	T	T	C	C	C	C	C	T	C	T	T	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524109 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	414 bp upstream
Cpgi15139	CpG island 15139	96 bp distal
Rr602723	regulatory region 602723	1953 bp distal
Rr602724	regulatory region 602724	425 bp distal
Rr602725	regulatory region 602725	469 bp distal
Rr602726	regulatory region 602726	within coordinates
Rr602727	regulatory region 602727	334 bp distal
Tssr1350	transcription start site region 1350	502 bp upstream
Tssr44149	transcription start site region 44149	473 bp upstream
Tssr44150	transcription start site region 44150	437 bp upstream