rs3023020 SNP Detail

Summary

• ID
  rs3023020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524257 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TATAG AGCCTTGGCC AGTCCCCCGA
  R
  GTCACCAGAG CAGGCCTGTG GGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16375710	C04.133.003	TWGNF	TWGNF-Mouse-2	f	SNP	A	G	G	A	G	A	G	G	A	G	A	A	A	A	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	A	A	A	G	A	G	G	G	A	G	A	G	G	G	G	G	G	G
ss147620248	ENSMUSSNP4268029	ENSEMBL	ENSEMBL_Sanger	r	SNP		T																		C
ss321367531	CHEV_4_137352861	CHEVERUD	SCREENING_POP	r	SNP																									C																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3023020					SNP	A	?	G	A	G	A	G	G	A	G	A	A	A	A	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	A	A	A	G	A	G	G	G	A	G	A	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524257 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	562 bp upstream
Rr602724	regulatory region 602724	573 bp distal
Rr602725	regulatory region 602725	617 bp distal
Rr602726	regulatory region 602726	72 bp distal
Rr602727	regulatory region 602727	482 bp distal
Tssr1350	transcription start site region 1350	650 bp upstream
Tssr44149	transcription start site region 44149	621 bp upstream
Tssr44150	transcription start site region 44150	585 bp upstream