rs3023018 SNP Detail

Summary

• ID
  rs3023018
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524313 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTATA ACTCTCCCAA TAACGTGAAG
  C
  AAGAAAAACC AGGGGATAGT GTCTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147620258	ENSMUSSNP2223275	ENSEMBL	ENSEMBL_Sanger	r	SNP	G
ss321367533	CHEV_4_137352917	CHEVERUD	SCREENING_POP	r	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs3023018					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524313 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	618 bp upstream
Cpgi15139	CpG island 15139	300 bp distal
Rr602724	regulatory region 602724	629 bp distal
Rr602725	regulatory region 602725	673 bp distal
Rr602726	regulatory region 602726	128 bp distal
Rr602727	regulatory region 602727	538 bp distal
Tssr1350	transcription start site region 1350	706 bp upstream
Tssr44149	transcription start site region 44149	677 bp upstream
Tssr44150	transcription start site region 44150	641 bp upstream