rs3023017 SNP Detail

Summary

• ID
  rs3023017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  101
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524329 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTCCA AACTCGGTCT CTTATAACTC
  Y
  CCCAATAACG TGAAGGAAGA AAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147620262	ENSMUSSNP5104670	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	G
ss321367534	CHEV_4_137352933	CHEVERUD	SCREENING_POP	r	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs3023017					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524329 () rs orientation: reverse

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	634 bp upstream
Cpgi15139	CpG island 15139	316 bp distal
Rr602724	regulatory region 602724	645 bp distal
Rr602725	regulatory region 602725	689 bp distal
Rr602726	regulatory region 602726	144 bp distal
Rr602727	regulatory region 602727	554 bp distal
Tssr1350	transcription start site region 1350	722 bp upstream
Tssr44149	transcription start site region 44149	693 bp upstream
Tssr44150	transcription start site region 44150	657 bp upstream