rs30229170 SNP Detail

Summary

• ID
  rs30229170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121292262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTACTTTC CTTGGTTCAG
  ATCTCAATGT TAACCTTCTT GTAGAAGCCT AGGACGCATT ATCTAGCTTC TTAGAATCTT
  AGTCTTGCCT GCGTACTAAC TCCTTCTTGG TAGTTTGAGC ATAAAGTGAT ATAATCTGAA
  TAGTTTCTGA GATAAAGCCT GGCCCACAGA AGTAGCCTTC CCTGGGTGAT AACAGTTATC
  R
  TTATCACTGT CGTTCTTATA TGATCACTAT CCTGTATTCC AGGAGCACAG TATTGCATTA
  AGGTCAGCAA GGGTGTTTTA ATAATGCTCA CTATTGGTGT GCTTTCCTTT CTCCTCTGAC
  CTAAAGCATC CTTAAATATC GGTAGATATT ACAAATATCT ACCAATCCTG CAGACACTGG
  TAAACCAGCT CCCAGCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46926684	NES10671736	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30229170					SNP	A	A	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926684	NES10671736	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121292262 () rs orientation: forward

Symbol	Name	Function Class
Rr584095	regulatory region 584095	1528 bp proximal
Rr584096	regulatory region 584096	1814 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron