rs30228243 SNP Detail

Summary

• ID
  rs30228243
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151810534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTCGAT GCAATGGGTT
  TTAATCGTCT GTCAGACTGG CTATAGCAAG TGTCGCGATT TGAGTGAGAA CGGTCCCCAT
  TTGAATGTTT GGTCTGCACT TGGTGGAACT GATTGTGAAG GATTAGGAGG TGTGGCCTTG
  TTGGAAGAGG TGTGTCTCTG GGGGCAGGCT TTGGGGATTT TAAAAGCCCC ACCATCTCCA
  S
  TTAGTGTGTG TGCAACCCCC TCCACTGCCT CTGGACTCTG GATCAGGTGC AATCTCTCAG
  CTACTTCTAT AGTGCCATGC ATGCGTGCCT GCTGCCATAC TCCCCACATG ATGGTCATGG
  GCTCACCACC CTCTGAAACT GGAAGCTCAA TAAACTCTTT CTTCTATAAA GACACCATGG
  CCTGGCCATG GTATCTCTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45409027	mCV24970925	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss136100793	ENSMUSSNP5089371	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss321028035	CHEV_3_151767861	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30228243					SNP	G	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151810534 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			531 bp proximal
Cpgi13940	CpG island 13940			1633 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			within coordinates
Rr587452	regulatory region 587452			within coordinates
Rr587453	regulatory region 587453			630 bp proximal
Rr587454	regulatory region 587454			696 bp proximal