rs30228000 SNP Detail

Summary

• ID
  rs30228000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121266835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGGGGAGA TGGTTCTAAG ACAGGTGTCT ACCCATCCAG
  GAACACACCG AGGACTGACA AGCATCAGGC AAGGCTACAG CTGACTGCTA GCTTGCAGGA
  Y
  GAGGGCCAAC AGATAGAACC CAGGTTCTGC TCTGTACTGT GGCTTGACTA ACGTTGTGGG
  AAATTTTTTT ATAATGGCTG GATTGGGGCT GGAGAGATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss46926381	NES10673091	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30228000					SNP	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926381	NES10673091	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121266835 () rs orientation: forward

Symbol	Name	Function Class
Gm65969	predicted gene, 65969	1865 bp downstream
Rr584089	regulatory region 584089	1481 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron