rs30226476 SNP Detail

Summary

• ID
  rs30226476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141979882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCTTTT GAGCTTTTAA
  GCCTTTCATT TAAAAATACA TTACCAATTC AATTAACAAA AAGTACAATA TATGTTTTTA
  AAATCAAGTC TTCTCATGGT ATTTTCTACA CTATATAGCA TAGTAAACAC ACTTCCTCAC
  CTTTTGCACC AAAGCATATC TGTGTGCTAG CCTTTGAATA TTCCCACTTT TTGTATTGTA
  R
  TATATCATGA AACATGTTTA TAAAATTACA GTTCTCATAA TATTTTTAAA TAGCACATCA
  AAATACTCTG GAATGTTCTG CCCCATTCTA TTTCATTTGG GGGCATGCTG GCTACATACC
  AAGTTCCAAC ACAAAAAAAT AGTTTTTGTT TTTGAAGAAA AGGAAGTACT TACTATTGAC
  TCTATCATCA AACAATGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45408920	mCV24096265	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss136011673	ENSMUSSNP3372032	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss320999839	CHEV_3_141937085	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30226476					SNP	G	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141979882 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	980 bp upstream
Rr586404	regulatory region 586404	379 bp proximal
Rr586405	regulatory region 586405	983 bp proximal
Rr586406	regulatory region 586406	1111 bp proximal