rs30226473 SNP Detail

Summary

• ID
  rs30226473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8417239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGAAAAT GAGAGCCAAG
  GTCAAATAAC ACAGCTTTCT GCTCACCTCT TCAGTTTGCC AAACATTGTT TTTCTAGTGG
  AGTTCTAGGC TAGGCGAGGC CAGTGAGAGT AACACTATCA CTCCTGTGTT CAATGGCAGA
  ATTGAATTTG CCTGCCTCAG GACATCTGGA TGCAGAGGGG TACAACATAG CTGCTTTCAC
  R
  TTTGTGCATA TATGAAAATG CACAGTGTGA GCCAGCAAGA TGGCACAGTG GGTAAAGGCA
  CTTGCTGCCA CACTGGAAGA CAGAAGTTTA GTCCCTGGAG ACCACGTGAT ATTAGGAAAG
  AACTGACCTC CACAAGTTGT CCTCTGACCT ACAAAACACC GTGGCATGTG TGTGTTCCTG
  TTCATTCATC TCTCTCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45907879	mCV23998880	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss51551457	NES14868238	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		A	G	G	G	A	G	G	A	G
ss132968453	ENSMUSSNP4914361	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30226473					SNP	A	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51551457	NES14868238	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8417239 () rs orientation: forward

Symbol	Name	Function Class
1810015A16Rik	RIKEN cDNA 1810015A16 gene	1457 bp downstream
Gm45062	predicted gene 45062	Intron
Rr626392	regulatory region 626392	41 bp distal
Umad1	UMAP1-MVP12 associated (UMA) domain containing 1	Intron