rs30225776 SNP Detail

Summary

• ID
  rs30225776
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119979975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTTAATGAT AAATAGCATT AAAATGAAAC AGAAACACTA
  ATAAAAGTCA TTTGCGTGCC TTAAGAGTTG GAGAACACAG CCGGATGGTG GTGGCACACG
  M
  CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGGCAGATTT CTGAGTTTGA GGCCAGCCTG
  GTCTACAAAG TGAGTTCCAG GACAGCCAGG GATACACAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45908541	mCV22584058	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss133594483	ENSMUSSNP6035614	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30225776					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119979975 () rs orientation: forward

Symbol	Name	Function Class
Rr380001	regulatory region 380001	within coordinates
Rr637751	regulatory region 637751	873 bp distal
Rr637752	regulatory region 637752	1076 bp distal
Tssr62747	transcription start site region 62747	763 bp upstream
Tssr62748	transcription start site region 62748	690 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	Intron