rs30225710 SNP Detail

Summary

• ID
  rs30225710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18432687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTCAAA TGTGCTATAA
  GCAGGACTAC CAGTCAGGTG GGGATTAGTC ATGCTGCAGA AAGTTCAATG CCATGCCTTG
  ATAAGTTATG GTCTCTGAGC CTCCCTCCAG CCACCCTCCC TCTGAGCACT ATAAACTCTG
  ACCTAAGGAA GAGGATACTT GCTCATGATG AAAAGGATCA TGAAAAACAA TGGAGCCTCA
  Y
  CTCTACCACC GATCTATTAA CTCTAAAGTG CATGCTATTT CTGATTCTCA GTTTTGCCCT
  CGAGAATAAA AACAACTTCC CCTAAAGCTG AATTTCCATG GAATCTGCTT GGAATTAGAA
  GCATGCAGAC TGGCAATCTG AAGCACTTAG CTCCTTCACT GGTGGCCGGC TTCAGTCTGT
  GCTCCATGCT TTAAGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45907955	mCV23958994	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss133034754	ENSMUSSNP6675839	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30225710					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18432687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm43843	predicted gene 43843			1443 bp upstream
Rr626922	regulatory region 626922			1859 bp proximal