rs30225084 SNP Detail

Summary

• ID
  rs30225084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23441007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATCCTG AAGCTGATGA
  CCTGAAGAAA AATTGTTTCA AAGATATCCA ATTCTTATTA TAATATGAAT TATAATATAG
  TATCAGAAGT ACTTTATATC AGTCATGCTT TCTTAAATCT AACAAATACT ACAACATTGG
  GGAAACATAA GAAAAATGCA TAAGAAATTT TAATTTTGGA GAGATCTTAA ATATATTCTT
  Y
  GTAATTGTTC TTTCATCTTG AACAAAAATT TACCCTCAAT TTTAAAACAC AGTCTCTTAG
  ACAGTTATTA AAATAGATCT ATTACTGTAA ATACATCAGG GTTAAGAGTA TAAAAAGGAA
  TTCAACCCAT GTAGGAAACT AAACAAATAC CCAACATTAA CAAATAATTT GCTTTCTGAT
  TTTTTGACTC TAATTTAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45908427	mCV27552249	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				C		C
ss60871214	NES15986337	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		C	C	C	C		C	C	T	C		C
ss133073449	ENSMUSSNP66698	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss321768448	CHEV_6_23391008	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30225084					SNP	C	C	T	T	T	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60871214	NES15986337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23441007 () rs orientation: forward

Symbol	Name	Function Class
Cadps2	Ca2+-dependent activator protein for secretion 2	Intron
Rr627175	regulatory region 627175	606 bp distal