rs30224849 SNP Detail

Summary

• ID
  rs30224849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121293181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCTTTG AGACCCATAC
  TCTGAACCAT CTGAAGTGCA CAGGGCCTGA GAAGCTTGCA GTTCCTCTTC TGTAAGATGA
  CGAGTGCCAA CAGCAAATTA TGCTTTGGAG GTACAGAATA TTTACATAGA GTGGGGTGGG
  GCATCATTTT TCTCAGACAG ACAGAAAGCT AGTATGGATG CTAAGAGGGG ACAATCTTTC
  Y
  TCTTGGCTGC CCTGCATGGC CATTGTTACA CATTTCCTAG TTTGTCACAC TGGTGATAAC
  GGTCAGCAAG TGGAGCACTT GAAGTGATAA ATCAAGATGC ACTTGACCCT CAAAGACTTG
  ACATCTTTTA AAAAAGCCAA ACCCAGAGGC TATTTTTGAC TAATTTCTGT GGGTTGAAGT
  ATCAAATCTC CCCTACATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46926729	NES10671772	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30224849					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46926729	NES10671772	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121293181 () rs orientation: forward

Symbol	Name	Function Class
Rr584095	regulatory region 584095	609 bp proximal
Rr584096	regulatory region 584096	895 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron