rs30222385 SNP Detail

Summary

• ID
  rs30222385
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119979115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCTTATTA TTTTATATAC AAGAAGATTT TGTGGGTAGT
  AAAAACACAT TGGTTGAAAG GATTATTTCT GTCATAGTAG ACTAAACAAC AAAAGTAAAT
  M
  TAAAACAAGA GATTTCTAGA AAATATTGAT TGACTTACGT CTTAAGTGTT CCAGATGTCA
  TTAGTTCAGT CACTAAAACA ATGCATTTTT TCCCTTTTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45906364	mCV22584070	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss133594474	ENSMUSSNP3393005	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30222385					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119979115 () rs orientation: forward

Symbol	Name	Function Class
Rr380001	regulatory region 380001	within coordinates
Rr637751	regulatory region 637751	13 bp distal
Rr637752	regulatory region 637752	216 bp distal
Tssr62747	transcription start site region 62747	85 bp downstream
Tssr62748	transcription start site region 62748	157 bp downstream
Wnk1	WNK lysine deficient protein kinase 1	Intron