rs30222376 SNP Detail

Summary

• ID
  rs30222376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56545795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTCACC GTCACCGCCA
  CTGTCGTGTG CGAGAACGCC AGGAACGGCC GGGGTGCAAA GTTCTCACCG ATGGTGAAGC
  TGTACCCGTC GATGCTGAAA GTGGCGCTCC TACATTTCTT GAAGCCCTCT TTCTTGTGGC
  TGGTGTCCGT CATGACTCCT GCGTTCCCGG TCCTGGCTTG AGCCCGCGCC CAGCCTCCCT
  Y
  CGCTGCACTG TCACTGCAGA CGCGCGCTAG GTACAAGCTG CTCACGCCGG CTGCAGGCAC
  CCAGACCTGG GAGCTAACAA CCAAGGCTCC TAGTGAAGCC CCTGCGCCCC CGCCACTGCC
  CCATCCCGAG CCCGCTGTAG CTGCGATGGC AGGGGCACTG GAGAAGCTGC GTGTGGCTGT
  GGGCTGGCCC GGGCTGCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45908017	mCV25430911	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss133228469	ENSMUSSNP5044009	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30222376					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56545795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			within coordinates
Gm66600	predicted gene, 66600			within coordinates
Pde1c	phosphodiesterase 1C			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			177 bp distal
Rr631076	regulatory region 631076			283 bp proximal
Tssr1858	transcription start site region 1858			341 bp downstream
Tssr61134	transcription start site region 61134			111 bp downstream
Tssr61135	transcription start site region 61135			132 bp downstream
Tssr61136	transcription start site region 61136			298 bp downstream
Tssr61137	transcription start site region 61137			373 bp downstream