rs30221816 SNP Detail

Summary

• ID
  rs30221816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151897602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGTCAA ACACGATTAA
  TGAGCCTGAA TCCTACGGCT TAACACAGAG GTGCACTTGA GCACTCCATA AGATGGAGCC
  AAATAACCTG CGTTTACACA AGTGGCTTTG TGGGAACTCA CACACCACTC CACCTACTCA
  AGAGTGGCCA GAGTACTGGC ACTGTCTCAA GAGCCTGCTC GCTCCTGAGA GGTCACACCA
  Y
  GGCATTCTCA ACTGTGTGAC CATGGGGAAC AGACAGCCTC AACTATCCAC ATCTTGCTTC
  TTGTAATTAC TCACTCACTT TGTAAGAACT TGACACTGTG GATTTGCACG AATTACAACC
  ACAGGCAGCA GCATGCTTGG GACTGACCCA AAATTAAAGC AGGAGGAAAA GGGCCCACCA
  CTGCTCTGAG TTGTCGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45408811	mCV22364087	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss51060588	NES13427719	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C	C		C	C	T
ss136101300	ENSMUSSNP6783652	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss321028365	CHEV_3_151854929	CHEVERUD	SCREENING_POP	f	SNP								T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30221816					SNP	T	T	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060588	NES13427719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151897602 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13944	CpG island 13944			1736 bp proximal
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm64624	predicted gene, 64624			364 bp upstream
Rr587481	regulatory region 587481			424 bp distal
Rr587482	regulatory region 587482			118 bp distal
Rr587483	regulatory region 587483			within coordinates
Rr587484	regulatory region 587484			1870 bp proximal
Tssr36163	transcription start site region 36163			1758 bp downstream
Tssr36164	transcription start site region 36164			1782 bp downstream
Tssr36165	transcription start site region 36165			1808 bp downstream
Tssr36166	transcription start site region 36166			1838 bp downstream
Tssr36167	transcription start site region 36167			1868 bp downstream