rs30221113 SNP Detail

Summary

• ID
  rs30221113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17749549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCGCAGACCT GCCCTGCGCT AGCTACCTAG CCCTGCCTCA CTGCATCCCT CAAGAGCCGC
  GGCAGCCTTT CCTTGCCTGC TGGATTTTGA GAAGCAGCTC TTCGATTTGG GCTGGTGTAG
  GAGCCCTGGC TTTCCATTCT CGAGAGAAAG CTGAAGCGCT CAGAGGAGAA TCTGGCAGCT
  GGACATAGCT CGGACTGCAT TGTCTGGCTT CATGACCCCT GCTGTGTAGC CGGCTCATCT
  CTTTGCTCTC AGGAGCACAT GCACATCTTA CATTTTCCTA CTTCCTTTTT CTTTTTCTTT
  Y
  CCTTCTTCTA ATTTTTTTTT AAAGCACCTT CTGGAGCCAG CCATGTTTGG TACTGAATCT
  TCATGTAAGT AAATGGATCC TACTTTTCTG TTCTATAGAA TCTGTGTGCT GTCATGGTTT
  CGCTGACTTG AGTTCCTGTC ACTTTGCCTT AGGTTAGTAA TATTTGCATT TGCCTCTAAT
  TACAGAGGAA CTGGTCCTGG GGAAGGGACT TCCCTGGAGT GGATTATTCA TTCTTAAAGC
  CAGGGATGTC AATGTGGTCA AAATCAGGCC TCCAAGAGGG AGGAGGCAAG AAGACAGTAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45905978	mCV22806985	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss133021965	ENSMUSSNP2848900	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30221113					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17749549 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			650 bp upstream
Rr626852	regulatory region 626852			1474 bp distal
Rr626853	regulatory region 626853			324 bp distal
Rr626854	regulatory region 626854			within coordinates
Rr626855	regulatory region 626855			1423 bp proximal
St7	suppression of tumorigenicity 7			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			447 bp downstream
Tssr55095	transcription start site region 55095			528 bp downstream
Tssr55096	transcription start site region 55096			399 bp downstream
Tssr55097	transcription start site region 55097			285 bp downstream
Tssr55098	transcription start site region 55098			18 bp upstream