rs30220123 SNP Detail

Summary

• ID
  rs30220123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56545381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAT CTGTCTCCAT TCGTCTCTAC
  Y
  CATCCATTCT CTCCTAGACT TAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45905968	mCV25430904	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss133228460	ENSMUSSNP1807179	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss321806970	CHEV_6_56518390	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30220123					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56545381 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66600	predicted gene, 66600			227 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			within coordinates
Rr631076	regulatory region 631076			697 bp proximal
Tssr1858	transcription start site region 1858			755 bp downstream
Tssr61134	transcription start site region 61134			525 bp downstream
Tssr61135	transcription start site region 61135			546 bp downstream
Tssr61136	transcription start site region 61136			712 bp downstream
Tssr61137	transcription start site region 61137			787 bp downstream