rs30217467 SNP Detail

Summary

• ID
  rs30217467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119457030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC AGCCTGCAGG CCCGGGGCAT
  Y
  CGCCGCGTGC AGATCCTCAG CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45906310	mCV22763819	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss133589817	ENSMUSSNP266903	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss321928128	CHEV_6_119430087	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30217467					SNP	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119457030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	within coordinates
Fbxl14	F-box and leucine-rich repeat protein 14	Coding-Synonymous
Rr637690	regulatory region 637690	1831 bp distal
Rr637691	regulatory region 637691	391 bp distal
Rr637692	regulatory region 637692	324 bp proximal
Rr637693	regulatory region 637693	1781 bp proximal
Tssr58502	transcription start site region 58502	567 bp downstream
Tssr58503	transcription start site region 58503	539 bp downstream
Tssr58504	transcription start site region 58504	522 bp downstream
Tssr58505	transcription start site region 58505	274 bp downstream
Tssr58506	transcription start site region 58506	1313 bp upstream
Tssr58507	transcription start site region 58507	1391 bp upstream
Tssr58508	transcription start site region 58508	1451 bp upstream
Tssr58509	transcription start site region 58509	1476 bp upstream
Tssr58510	transcription start site region 58510	1869 bp upstream
Tssr62722	transcription start site region 62722	390 bp downstream
Tssr62723	transcription start site region 62723	1488 bp downstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron