rs30217117 SNP Detail

Summary

• ID
  rs30217117
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108513593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTATAGAA GAACAAAGGG TTTGGTAAGT AACCTGCTCT
  ACCACATGCC TGTCAGAAAA CACTGGATGC GTCTCAAACA GCAAGAGCAG TCCTCCCAAC
  M
  CAAACTATGA CTTTCACAAC AGCGTCACAG GATCTGTGGT CTGCTGCTGC TGCTCTCTCT
  GTACACAGCT ATAGCTATAT CCTCAGGAAT GCACACTTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45906798	mCV23140584	ABI	CRAMUS_MOUSE	f	SNP		A	C
ss133504451	ENSMUSSNP2946946	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30217117					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108513593 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636129	regulatory region 636129	1094 bp distal
Rr636130	regulatory region 636130	within coordinates
Rr636131	regulatory region 636131	1603 bp proximal