rs30217116 SNP Detail

Summary

• ID
  rs30217116
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118455349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTAGACCA GCTTGGACTA CATAGTGAGA CATTATTTCA
  AATAAATACA TAAATAAAGT CATTAATTAA TTAGACAACA GTTTTAGTAC CATATTCCCT
  W
  AAAAGGTATA TCGTGTATAT AGATTAAAAA CAAAAACAAA CAAACAAAAA ACCAAATGCT
  TAATTCCAGT CAGCCGGGTG CATACCAAAG GCCTAATGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45906797	mCV24802908	ABI	CRAMUS_MOUSE	f	SNP		T					A	T
ss48065604	NES11724138	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	A		T	A	T		T	A		A
ss133583022	ENSMUSSNP4273494	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A					T
ss321924612	CHEV_6_118428406	CHEVERUD	SCREENING_POP	f	SNP											A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30217116					SNP	T	T	A	T	A	A	A	T	A	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48065604	NES11724138	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118455349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	576 bp proximal
Rr637483	regulatory region 637483	67 bp distal
Rr637484	regulatory region 637484	52 bp proximal
Rr637485	regulatory region 637485	922 bp proximal
Tssr62662	transcription start site region 62662	849 bp downstream
Zfp9	zinc finger protein 9	Intron