rs30216941 SNP Detail

Summary

• ID
  rs30216941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126401397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCCAACT TGTGAGGAAA
  GAACATTTTA ATTGCCATGG TAACATAAGA TCAAGTTGAA GTTTCAGGCG GCTCTTTGCG
  ACTTTCTAGA AGGAAAAATC CTAGAGTGGG AAATGTTATC AAAATGTTAG GAAAGTGACC
  GTGCAAGAGT GTGTGAGACT CGGCAGTGAG CTCTTAGGAT TCCTGAATGA TGCGCTTCTT
  R
  CTGCAGAGAA AAGCAGACAT TGAAACAAAT GAAGAATAAG AGACATGTAT GCAGGAGACC
  GTTCTAGTTT TCTGGTTCAT TCTGTTAGAC CAGTGAGGAA AGGGAGACTT TTGTTTGTTT
  GTTTGTTTGT AGTTCCTTTT ACAACATTAG TATTGAGTGT GTCAGACTCA TCCAAAAGAA
  TGGGGCAATT AAAAGGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45407668	mCV23467160	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss46955551	NES10678170	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A		A	A	A	A		G	A	A	A		A
ss135837004	ENSMUSSNP7114544	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss320946655	CHEV_3_126310666	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30216941					SNP	G	G	G	A	G	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955551	NES10678170	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126401397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			1439 bp proximal
Rr584653	regulatory region 584653			1650 bp proximal
Tssr31576	transcription start site region 31576			627 bp downstream