rs30216653 SNP Detail

Summary

• ID
  rs30216653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91177499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGGAACAA CAGGGCACTG GCTGTCTGGG TTTGAGCTAC
  AGCCCCTGGC TGTATCAGTC CAGTCTCTGG GCCTCCAATA GGGACTGCCA ACACTGGGGA
  Y
  TGTCTCCTTG CTTCCTCAAA TTTGTATCCC TGGGGTGGGG CAGAAGGAAT CCAGCCAACT
  GACCTCTTGT GATATGAGGC TCACGTGTGC TGTCCTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45906606	mCV23964885	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T
ss51363761	NES13733098	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	C	T	T	T	T	T	T	T
ss133382218	ENSMUSSNP4207967	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30216653					SNP	C	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51363761	NES13733098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91177499 () rs orientation: forward

Symbol	Name	Function Class
Rr634420	regulatory region 634420	within coordinates
Rr634421	regulatory region 634421	1581 bp proximal