rs30216380 SNP Detail

Summary

• ID
  rs30216380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108041089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATTTGTAA TTTTTTTCTC TAAAACACAA AGATGAAAAA
  CCTAAGATCC TGCATTTTGT AAAGCTGCCC CGTTTGTATG GATCTGTAAC AATTCCAGAA
  R
  CTAGAGTAAT TTGGTGACTT TCATAGATAA CTCAGGAACA GCCTACCTGC AAGCTACTCA
  TCAACTACTC CCTTCTTCCT CTGAAACCTC TAAGAAGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45906503	mCV24060750	ABI	CRAMUS_MOUSE	f	SNP		G					G		A
ss51822014	NES14764747	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	A	G	G	G	G	G	G	G
ss133494205	ENSMUSSNP2419536	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30216380					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51822014	NES14764747	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108041089 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	within coordinates
Rr399804	regulatory region 399804	765 bp upstream
Rr399805	regulatory region 399805	1071 bp upstream
Rr399806	regulatory region 399806	1591 bp upstream
Rr636028	regulatory region 636028	96 bp proximal
Rr636029	regulatory region 636029	844 bp proximal
Rr636030	regulatory region 636030	1170 bp proximal
Rr636031	regulatory region 636031	1675 bp proximal
Setmar	SET domain without mariner transposase fusion	917 bp upstream
Tssr58052	transcription start site region 58052	907 bp upstream