rs30216290 SNP Detail

Summary

• ID
  rs30216290
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90607378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCCAGT GTGAAATTGT
  GTAACTTCTC ATTTGGGCAT GGGGACTCCC CAGCAAGACC GAGGGCAGCC TCGGAGCAGG
  GCAGTGCCAC CGTGCAGCCT GTGCAAGCCT CTCACTCCCT TTGCTCTGTC TCAGAAGACG
  TACCCTGGGT TCTTCCTAGT CTTTATTTGC TAGGCGATAC TGGCATGGCT ACATTCTCTT
  W
  TACATTAAGG CTTATTGTTG GCTGTCTGTC TGTCTGTTAG AAGTGCTGGG ACTGGGATCC
  AGAATCTCAC ATGAACTGGA TAAGCATTCT GTCACCAACC TGTGATGTCC CCAGCTGTTT
  GTGACCTTCT GACCAGTTTT AAGCTTAGAT CTAGCTGGTA CCAGCAGTAG CACGGAAGTG
  GCTGCATCAC TGTCTACTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45905525	mCV23228240	ABI	CRAMUS_MOUSE	f	SNP		A	T					A		A
ss51361585	NES13741321	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	T	A		T	A	A	A	A	A	A	T
ss133378197	ENSMUSSNP2493709	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30216290					SNP	A	A	T	A	A	T	A	A	T	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51361585	NES13741321	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90607378 () rs orientation: forward

Symbol	Name	Function Class
Rr634261	regulatory region 634261	474 bp distal
Rr634262	regulatory region 634262	542 bp distal
Rr634263	regulatory region 634263	324 bp distal
Slc41a3	solute carrier family 41, member 3	Intron