rs30216112 SNP Detail

Summary

• ID
  rs30216112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108423112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAATTGTA AAAATTAGGA GAAGTGAAAA AGATAGGCCT
  AGTGAAAGGG CCACAGCCAG CTAGCATCCA GCTTGGCTTC CGAGGCTTCC TCTGCAGGAT
  Y
  CCCTTTCATT CAGTGTCTCA TCTGAGACTG GCAGCTCCCC TGTGAGGTGT GTACACGTGA
  ACTCTGTGCT GTAAGATGAA ACACACTCAA GGAAGTGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45906893	mCV23380974	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss133502568	ENSMUSSNP2663863	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30216112					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108423112 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636107	regulatory region 636107	761 bp distal
Rr636108	regulatory region 636108	763 bp proximal
Rr636109	regulatory region 636109	1109 bp proximal