rs30215920 SNP Detail

Summary

• ID
  rs30215920
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52891475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAACCA TGCTCTGTAA
  ACTGGTTGTA TTTGAAACAG TTATTTAAAG CACTGAGCTA ACAAATGAAT TGCTTGCTTC
  TAGAATCAGG GAGCTTGTTA CTCAGTACTT AGGATTCTCG TTGCCTAACA ACCCGCAGCA
  TTGCCACAAA CCTACTGGTC CTAAAAATAG CTTCTCTCCA CATTCAGGTT CTGAGATCAC
  K
  GAGAGTGAGC TTTCCTAGGG TGCAATCCAA TGCACACCAG GAGAAAAACT TCAACAATTA
  AGGGCTATGC AGACAATACA GTTTGCTTTT ACTGGGGCTA GGAGTTGAAG CCAGGGTTTG
  CCCAGACCCT CAGAAAATTC TCTACCATTG AGCCCCGAGG TCCACACAGT TCATGAACAC
  ACTCATTCAG CTTGCTAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45408446	mCV22817309	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
ss135180491	ENSMUSSNP3135993	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
ss320766333	CHEV_3_52787976	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30215920					SNP	G	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52891475 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	1479 bp upstream
Rr576615	regulatory region 576615	within coordinates
Rr576616	regulatory region 576616	1377 bp proximal