rs30214629 SNP Detail

Summary

• ID
  rs30214629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGTCCTA ATTAAGTGCC
  GAATGCTCTG ATTCCTTTGC CCGTAGTTTC TTGTCCTCTG GGGTGAGTAA TGATGGGACA
  CAAGTGTGTG CAACAGGCAG TCGGGGGTCA CAGTACTGGC ACGCAATATG GTGGCAGCAG
  ATCACTGGGT GGACAATGCC AGGAATGCAG GACTTGGCGA AAGCAGTTTC CAGGCCTGAG
  Y
  GGATTAGAAC CTAACTGACT TCCAACTGCT TCTCGGGAAC GCTTGGGTAC AATGCAGTCA
  CTCTTCCAGA ATGTGTGCTC TCTCTCTGAG CAGCACAGCC TCCTGCTGGC TCCCTGGGCA
  ATTTTGACTT TTTTCTTACA CTTATTGATT TGCAGAGGTG TAAAAGCCAG ACAATTGTGG
  GAGGCAGCCC TCTTCTACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45408333	mCV24236768	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T		T
ss47026596	NES10845636	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T		C	T	T	T		C	C	C		C
ss321010015	CHEV_3_146007701	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30214629					SNP	T	T	C	T	C	T	T	C	T	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026596	NES10845636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	548 bp proximal
Gm40167	predicted gene, 40167	1697 bp upstream
Rr587008	regulatory region 587008	698 bp distal
Rr587009	regulatory region 587009	903 bp distal
Rr587010	regulatory region 587010	354 bp proximal
Rr587011	regulatory region 587011	660 bp proximal