rs30213780 SNP Detail

Summary

• ID
  rs30213780
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118947389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGGGG GTGGTGGTGG
  TAAAATGAAG GCCGAAGAGG GTTCAGGAAC TTTGGCATCA TGCTAAGAAG TAATAGTGGT
  GTCAGGAAGG ACTCGGGAGT TGGGAGACAC AAGGCAATGT GGAAGTGAAG CACCTTGGCA
  GGCTCCTTAA CCAAATTTTA CAGGACTTAT AGCCCATGTG CCCTGAATGG ATGGGGAAGA
  S
  AGGACATACC TGGCTTTGGA ATATTAGCAA TGGGGCAGTG GTCTGGGGAA GGGAGACTCC
  TCCAGGCTTT TTTGGCTGTG CTGAGTCTGC CTAGCACAGG TTCCAACTGA ACCCTTCCCT
  TCCAAACACA AGCAAACAAA CTTCCATTTT GCCCATTTTA CATCCACAAC GTTCCACTGT
  TGCTTCCAGC ATCTGGTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss45904531	mCV24678711	ABI	CRAMUS_MOUSE	f	SNP		G					C	C
ss48071833	NES11869680	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G		C	G	G	C
ss133585800	ENSMUSSNP4087444	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs30213780					SNP	C	G	G	G	G	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48071833	NES11869680	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118947389 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637559	regulatory region 637559			1394 bp proximal