rs30212987 SNP Detail

Summary

• ID
  rs30212987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAATGCT ATGATTTAAA
  TACGGTTAGC ATCCTCCAAA ACTCCTAAGG AAACATTATC GGACACTGGT GAGACCATCA
  GAGGAGTCTT GTCATTAGGG CTGCGTCCTC ATGAAGGGAC CCGTGTGTTC TTGCAGGTGG
  TAGTTGGCTT GGGAGGCATG GATGGTTAAG AGCAGCTTGA GCAGAGGGAG CTCAGCTTCC
  Y
  CTGGCCCTGC TTGCTTCTCC CACCATGGAA CCTTCTGCTC TTCCACCATG GTACTAGGTA
  GCAGGAGGCC TTCAGCAGAA GCTGAACAGT CCCCAGCACC TTGCTCTTAG ACTTCCCAGC
  CTCCAGAGCT GTGAACTAAA TCAGGTTTTA TTCTTTATGT ATTATTGAGT CTCAGGTAAT
  CTGGGATTGT CACAGAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45406680	mCV25068818	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss135555679	ENSMUSSNP3018594	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss320855290	CHEV_3_102078099	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30212987					SNP	T	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181492 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	1078 bp proximal
Rr582220	regulatory region 582220	1558 bp proximal
Rr582221	regulatory region 582221	1813 bp proximal