rs30212749 SNP Detail

Summary

• ID
  rs30212749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:6084335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGGTAGA AAATAAGCTT
  AAGGATTTTG ATCAACAAAA CAAAACAGAA AAATCTGTTT CAGTGTATGC TGAACTTACT
  CACAGTTTGT TTATCTCAAG GATTACACTT TCTAAACAAC ATGAGAATTG CAGTAATTTT
  AGAAGCAGTA CAGAAAAATT TATGAGATAA ATTGCAAGTT TTAGAAAATA ATTTGGACAA
  Y
  GATCTACCTT CCTATTCCAG ATGCTAGCAA TCTGGACAAC AAGCTGTCAA TTGAAGTGGA
  CAGTTACCTG GCCCTTCCTC ATTCTCACTC AGTGTTGCCA AATCCTTTAA AAAAATTTAA
  GTGACACCAA TCTTCTATTT TCTTTCATCA TAAACACTTA GTAATTTCAT CATTCTTCAT
  GTGTCCAAGT GGATTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45406778	mCV25456646	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss51428596	NES14450529	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C		C	T	T	T	C	T	T	C	C
ss134546139	ENSMUSSNP591750	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30212749					SNP	T	C	C	C	T	C	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51428596	NES14450529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:6084335 () rs orientation: forward

Symbol	Name	Function Class
Rr573206	regulatory region 573206	162 bp distal