rs30210802 SNP Detail

Summary

• ID
  rs30210802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100872755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCTCAGTTC TTTGGCAGCT ATTATCTCAA AGCACTTTTC CTCAGTCTCC ACTTTTGAAC
  CTCCATGGTT CTTTTAATGC AAATTAGAAA GCCACTGGTT GCTATCTACC ACCTATAGAG
  GTTGGTGTTT CTGTATCAAG AGACAAGTGA TCTTAAGTGT CAGGGGAACA GGACTGAACC
  TAATAAAGAT TTGCCAGCCT GACTCTACTA ACAGAAAACA ATCACTCTCC CAATCAATCA
  ATCAATCAAT CAATCAATTT CTCTCTCTCC CCCCCCCCCA TCTATCTATT TTAATCACAT
  Y
  TATAGGCTAG GGAGCTGTCT TAATGAATAA AGTGCTTCCT TGCAAGTGTG AAAACCAAAG
  AACCCACTTA AAATACAGGT GGGTTTGGTA GCCGACCTGT CATCCTAGCA CTCAGGAGGC
  ACAGGCAAAG TGTCCCTAAG ACAAGCTGTC ACCTATCGAG GCTTGCAAAC AGGTGAGTTC
  CAAGGTCAGT AAGTGAAGTG GAGGGTGACC AAGAGACTCA CTCAACACCA ACCTCTGGCC
  TCACACAGCA CCCGCACACA TCCAAACATA TACAAATATA CAGAGGCACA CACCCCCTTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45407055	mCV24922248	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss135543295	ENSMUSSNP5324096	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320850400	CHEV_3_100769362	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30210802					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100872755 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66499	predicted gene, 66499			within coordinates
Rr581933	regulatory region 581933			1044 bp distal
Rr581934	regulatory region 581934			1170 bp distal
Ttf2	transcription termination factor, RNA polymerase II			Intron
				Noncoding-Transcript-Variant