rs30210788 SNP Detail

Summary

• ID
  rs30210788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58395141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTGGAGGTG AGACGAAAGG ATGGACCATC TAGAGACTGC CATACCCAGG GATCCATCCC
  ATAATCAACT GCCAAACACT GACAGCATTG CATACACTAG CAAGATTTTG CTGAAAGGAC
  CCTGATATAG CTGTCTCTTG TGAGGCGATG GCAGTGCCTG GCAAACACAG AAGTGGATGC
  TCACAGTCAG CTATTGGATG GAACACAGGG CCCCCAATGG AGGAGCTAGA GAAAGTACCC
  AAGGAACTAA AGGGGTCTGC AACCCTATAG GTGGAACAAC AATATGAACT AACCAGTACC
  Y
  CCAGAGCTCG TGTCTCTAGC TGCATATGTA GCAGAAGATG GCCTAGTCAG TCATCAGTGG
  AAAGAGAGGC CCATTGGTCT TGCAAACTTT ATATGCCTAA GTACAGGGGA ACGCCAGGGC
  CAAAAGTGGG AGTGGGGGCG GGAGGAGAGT GGGGGGAAGG GCATGGGGGA CTTTTGGGAT
  AGCATTGGAA ATGTAAATGA GGAAAATACC TAATAAAAAT TTTTAAATTA ATACTTTTTA
  AGATAATATT GGCAAGAATT CGAGAAATTA GGACTCTTAT ACATTACCTA TTGAGATTAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45407600	mCV24483802	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss135206584	ENSMUSSNP4157514	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30210788					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58395141 () rs orientation: forward

Symbol	Name	Function Class
Rr577231	regulatory region 577231	1524 bp distal
Rr577232	regulatory region 577232	1632 bp distal
Rr577233	regulatory region 577233	371 bp distal
Rr577234	regulatory region 577234	468 bp proximal