rs30210695 SNP Detail

Summary

• ID
  rs30210695
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68950291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTAACCAG GAATTGACAT GAGAAATTAT ACTTTAACTG
  ATTTTTTAAT ACTATTTCTT AGGGCTGGAG AGATGGCTCA GCAGTTAGGG GCATTAGCTG
  Y
  TCTTTCAAAG GTCCTGAGTT CAATTCCCAG CAGCCACACA GTGGCTCACA ACCACCTGAA
  ATGGGATCTG TTGCCCTCTC CTAGTGTGCA TGTGAAGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45407126	mCV25211976	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss135264679	ENSMUSSNP250988	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss320791798	CHEV_3_68846880	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30210695					SNP	C	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68950291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	1103 bp proximal
Gm65005	predicted gene, 65005	1892 bp upstream
Rr578116	regulatory region 578116	1320 bp distal
Rr578117	regulatory region 578117	421 bp distal
Rr578118	regulatory region 578118	934 bp proximal
Rr578119	regulatory region 578119	1787 bp proximal
Rr578120	regulatory region 578120	1924 bp proximal
Trim59	tripartite motif-containing 59	Intron
Tssr33523	transcription start site region 33523	1692 bp downstream
Tssr33524	transcription start site region 33524	1702 bp downstream
Tssr33525	transcription start site region 33525	1739 bp downstream