rs30209927 SNP Detail

Summary

• ID
  rs30209927
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58426354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGATAAA TATCACACTG
  TTGATGTATC TCCAAATGTC AAGCCTATAA GCCTATCCTG GGGGAGTTTG TTCCAAGAGA
  CTGCATTTTG GTGGCGAGCA GAGGTCTAAA GATCACCAGG GTTTTAAGTT GTGGGGTGAC
  TGCTACTCTA GTGTTACAGG ATTTTACAGG AACACGCAAG TTTTGCTATG GTAGGCTTTT
  W
  AACTTTTACT TTGATGGTTC TAGGGCTTAG GTTCAAGGCT TCATGCGTGC TAGGCATGAA
  CACTGAGATA TGCTTTTTCT CCACTTAATT TTTTTTTTAA AATAAGGTTA GTGCTCAATT
  GCCCAGAGTA GACCTGAACT CTCACTGTAG CAGAGTAGCT GGGATTATGG TATACATTTT
  GTTTATTTGG AGTGTGTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45407118	mCV24915822	ABI	CRAMUS_MOUSE	f	SNP		T	A					T
ss46981059	NES10792897	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	T	T		T	T	T	T	T	T	T
ss135207032	ENSMUSSNP7025141	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30209927					SNP	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981059	NES10792897	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58426354 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	within coordinates
Rr397680	regulatory region 397680	1375 bp downstream
Rr577245	regulatory region 577245	923 bp distal
Rr577246	regulatory region 577246	745 bp distal
Tssr29205	transcription start site region 29205	1432 bp downstream
Tssr29206	transcription start site region 29206	1387 bp downstream