rs30209809 SNP Detail

Summary

• ID
  rs30209809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135392914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAAATCC CCTTTTTGAA
  TGGAAGACTT CCTCTTTTTG TATTTTTTAG AGGGAACAGT AGGTAACTGT TAATTATTTA
  TACATTCTAA TAAACCATGA ATGCACCACA TAAAATACTG TACTCGGGGA GCAAACACTG
  TTTGGGGGGC TTCTCTCTTA CCAGAAGAAC AGTGGGCTTT TCATTGCCTG TTGGATAAGG
  Y
  TGCCTGTCAA AACAAGCTAG CGAAACAATT GAATGTGACT TAGCTGTTTA TCAGGTGTCA
  TCTCAGTACC AACAAAGTCC ATGCAAGGGT TGGAGGGGTC TCACAGCACG GATGAGCTGT
  TACCTGCTTT TAGCTAGAAC TAGAGAACTT ACTCTTTCAA ACAGCCTTTT ATTCTTTTAA
  AAACAATTTT AGGTTCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45406343	mCV25339264	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135928515	ENSMUSSNP1571418	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs30209809					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135392914 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	311 bp distal
Rr585766	regulatory region 585766	818 bp proximal
Tssr31841	transcription start site region 31841	1967 bp upstream
Tssr31842	transcription start site region 31842	1986 bp upstream
Tssr31843	transcription start site region 31843	1998 bp upstream
Tssr35822	transcription start site region 35822	732 bp downstream