rs30209420 SNP Detail

Summary

• ID
  rs30209420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77065413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG CTGTGATACC GCTGGGCAGT
  R
  GTGGCGCAAC GCCTTTAATC CCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39657186	mCV22711842	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss147545112	ENSMUSSNP5581380	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30209420					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77065413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B430105A11Rik	RIKEN cDNA B430105A11 gene			1555 bp upstream
Katnal2	katanin p60 subunit A-like 2			Intron
				Noncoding-Transcript-Variant
Rr541072	regulatory region 541072			228 bp proximal
Rr541073	regulatory region 541073			419 bp proximal